I've got an IT 2.14 mod that's been in the works for about 4 years and have just recently finished. I was all set to release it when I decided to wear it out on my CD walkman and came face to face with that dreaded foe...aliasing. It's very subtle for the most part, but it's definitely there rattling away in the mix. I've nailed down the culprits to 3 samples I recorded from my copy of the MTV Music Generator for PS1 (which will simply require rerecording to correct) and 1 looped, otherwise well-behaved preset exported from Paul's Sound Designer 2.2 for DOS.
My question is this: can bad loop points cause aliasing?

This problem just appeared out of nowhere. Until now I've only had to deal with clicking, but this is a new one. What bothers me most is that I can't really hear any aliasing (or not much) while playing it back in IT (due to linear interpolation?), even on my good speakers (M-Audio Studio Pro 4s...overkill for IT I know, but very nice

). I only heard it after I'd transferred it from my DOS box over to my XP machine and exported it as a WAV with XMPlay. That's a bit of tedious work only to find out afterwards that my samples are misbehaving.
But my question is more academic than anything. Has anyone run into this problem before?
Curiouser and curiouser...